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Proceedings of the National Academy of Sciences of the United States of America|February 15, 2011
Clustering to identify RNA conformations constrained by secondary structureAdelene Y L Sim, Michael LevittCurrent Opinion in Structural Biology|April 28, 2012
Modeling nucleic acidsAdelene Y L Sim, Peter Minary, Michael LevittProceedings of the National Academy of Sciences of the United States of America|February 7, 2012
Modeling and design by hierarchical natural movesAdelene Y L Sim, Michael Levitt, Peter MinaryJournal of Bioinformatics and Computational Biology|July 20, 2012
Evaluating mixture models for building RNA knowledge-based potentialsAdelene Y L Sim, Olivier Schwander, Michael Levitt, et al.RNA (New York, N.Y.)|April 28, 2011
Fully differentiable coarse-grained and all-atom knowledge-based potentials for RNA structure evaluationJulie Bernauer, Xuhui Huang, Adelene Y L Sim, et al.Advances in Colloid and Interface Science|October 21, 2015
Nucleic acid polymeric properties and electrostatics: Directly comparing theory and simulation with experimentAdelene Y L SimJournal of Computational Chemistry|February 24, 2015
How does a hydrocarbon staple affect peptide hydrophobicity?Adelene Y L Sim, Chandra VermaProteins|April 21, 2017
Designing dual inhibitors of Mdm2/MdmX: Unexpected coupling of water with gatekeeper Y100/99Xiong An Lee, Chandra Verma, Adelene Y L SimPhysical Review. E, Statistical, Nonlinear, and Soft Matter Physics|September 26, 2012
Salt dependence of the radius of gyration and flexibility of single-stranded DNA in solution probed by small-angle x-ray scatteringAdelene Y L Sim, Jan Lipfert, Daniel Herschlag, et al.Physical Review. E, Statistical, Nonlinear, and Soft Matter Physics|September 19, 2015
Dynamical traps in Wang-Landau sampling of continuous systems: Mechanism and solutionYang Wei Koh, Adelene Y L Sim, Hwee Kuan LeePageof 21