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Research Square|August 16, 2024
Evaluating urine volume and host depletion methods to enable genome-resolved metagenomics of the urobiomeZachary J Lewis, Angela Scott, Christopher Madden, et al.
Peerj|June 28, 2021
Expanding standards in viromics: in silico evaluation of dsDNA viral genome identification, classification, and auxiliary metabolic gene curationAkbar Adjie Pratama, Benjamin Bolduc, Ahmed A Zayed, et al.
Microbiome|February 1, 2021
VirSorter2: a multi-classifier, expert-guided approach to detect diverse DNA and RNA virusesJiarong Guo, Ben Bolduc, Ahmed A Zayed, et al.
ISME Communications|February 10, 2023
iVirus 2.0: Cyberinfrastructure-supported tools and data to power DNA virus ecologyBenjamin Bolduc, Olivier Zablocki, Jiarong Guo, et al.
Environmental Microbiology|August 5, 2024
Virus ecology and 7-year temporal dynamics across a permafrost thaw gradientChristine L Sun, Akbar Adjie Pratama, Maria Consuelo Gazitúa, et al.
The ISME Journal|January 4, 2020
Phage-specific metabolic reprogramming of virocellsCristina Howard-Varona, Morgan M Lindback, G Eric Bastien, et al.
Bioinformatics (Oxford, England)|June 16, 2021
efam: an expanded, metaproteome-supported HMM profile database of viral protein familiesAhmed A Zayed, Dominik Lücking, Mohamed Mohssen, et al.
Nature Communications|May 14, 2024
Long-read powered viral metagenomics in the oligotrophic Sargasso SeaJoanna Warwick-Dugdale, Funing Tian, Michelle L Michelsen, et al.
The ISME Journal|March 29, 2024
Environment-specific virocell metabolic reprogrammingCristina Howard-Varona, Morgan M Lindback, Jane D Fudyma, et al.
Nucleic Acids Research|August 9, 2020
DRAM for distilling microbial metabolism to automate the curation of microbiome functionMichael Shaffer, Mikayla A Borton, Bridget B McGivern, et al.
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