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Elife|July 24, 2020
Odd-paired is a pioneer-like factor that coordinates with Zelda to control gene expression in embryosTheodora Koromila, Fan Gao, Yasuno Iwasaki, et al.Science (New York, N.Y.)|March 1, 2003
Phylogenetic shadowing of primate sequences to find functional regions of the human genomeDario Boffelli, Jon McAuliffe, Dmitriy Ovcharenko, et al.Genome Research|January 17, 2003
Strategies and tools for whole-genome alignmentsOlivier Couronne, Alexander Poliakov, Nicolas Bray, et al.Nature|October 7, 2021
Isoform cell-type specificity in the mouse primary motor cortexA Sina Booeshaghi, Zizhen Yao, Cindy van Velthoven, et al.Plos Computational Biology|September 22, 2010
MetMap enables genome-scale Methyltyping for determining methylation states in populationsMeromit Singer, Dario Boffelli, Joseph Dhahbi, et al.Biorxiv : the Preprint Server for Biology|January 3, 2024
Efficient and accurate detection of viral sequences at single-cell resolution reveals putative novel viruses perturbing host gene expressionLaura Luebbert, Delaney K Sullivan, Maria Carilli, et al.Plos Computational Biology|May 30, 2009
Fast statistical alignmentRobert K Bradley, Adam Roberts, Michael Smoot, et al.Nucleic Acids Research|December 10, 2024
Accurate quantification of nascent and mature RNAs from single-cell and single-nucleus RNA-seqDelaney K Sullivan, Kristján Eldjárn Hjörleifsson, Nikhila P Swarna, et al.Biorxiv : the Preprint Server for Biology|July 29, 2024
Identification of spatial homogeneous regions in tissues with concordexKayla C Jackson, A Sina Booeshaghi, Ángel Gálvez-Merchán, et al.Nature Biotechnology|April 22, 2025
Detection of viral sequences at single-cell resolution identifies novel viruses associated with host gene expression changesLaura Luebbert, Delaney K Sullivan, Maria Carilli, et al.Pageof 20