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Methods in Molecular Biology (Clifton, N.J.)|September 24, 2016
Capture Hybridization Analysis of DNA TargetsAlec N Sexton, Martin Machyna, Matthew D SimonCold Spring Harbor Perspectives in Biology|November 3, 2019
Principles and Practices of Hybridization Capture Experiments to Study Long Noncoding RNAs That Act on ChromatinMatthew D Simon, Martin MachynaBriefings in Functional Genomics|November 11, 2017
Catching RNAs on chromatin using hybridization capture methodsMartin Machyna, Matthew D SimonNature Structural & Molecular Biology|March 24, 2020
Author Correction: Enhanced nucleotide chemistry and toehold nanotechnology reveals lncRNA spreading on chromatinMartin Machyna, Lea Kiefer, Matthew D SimonNature Structural & Molecular Biology|March 12, 2020
Enhanced nucleotide chemistry and toehold nanotechnology reveals lncRNA spreading on chromatinMartin Machyna, Lea Kiefer, Matthew D SimonAnnual Review of Genomics and Human Genetics|May 6, 2016
The Properties of Long Noncoding RNAs That Regulate ChromatinMichael Rutenberg-Schoenberg, Alec N Sexton, Matthew D SimonRNA (New York, N.Y.)|November 4, 2018
Carbodiimide reagents for the chemical probing of RNA structure in cellsPeter Y Wang, Alec N Sexton, William J Culligan, et al.Biochemistry|August 19, 2017
Interpreting Reverse Transcriptase Termination and Mutation Events for Greater Insight into the Chemical Probing of RNAAlec N Sexton, Peter Y Wang, Michael Rutenberg-Schoenberg, et al.Nature Communications|June 9, 2023
Systematic detection of tertiary structural modules in large RNAs and RNP interfaces by Tb-seqShivali Patel, Alec N Sexton, Madison S Strine, et al.Plos Computational Biology|July 3, 2025
Expanding and improving analyses of nucleotide recoding RNA-seq experiments with the EZbakR suiteIsaac W Vock, Justin W Mabin, Martin Machyna, et al.Pageof 10