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BMC Bioinformatics|December 6, 2008
Algorithm of OMA for large-scale orthology inferenceAlexander C J Roth, Gaston H Gonnet, Christophe Dessimoz
Nucleic Acids Research|July 13, 2006
Detecting non-orthology in the COGs database and other approaches grouping orthologs using genome-specific best hitsChristophe Dessimoz, Brigitte Boeckmann, Alexander C J Roth, et al.
Journal of Bioinformatics and Computational Biology|December 24, 2005
A dimensionless fit measure for phylogenetic distance treesManuel Gil, Christophe Dessimoz, Gaston H Gonnet
Bioinformatics (Oxford, England)|June 5, 2007
OMA Browser--exploring orthologous relations across 352 complete genomesAdrian Schneider, Christophe Dessimoz, Gaston H Gonnet
BMC Bioinformatics|December 7, 2006
Fast estimation of the difference between two PAM/JTT evolutionary distances in triplets of homologous sequencesChristophe Dessimoz, Manuel Gil, Adrian Schneider, et al.
Plos One|January 24, 2013
Inferring hierarchical orthologous groups from orthologous gene pairsAdrian M Altenhoff, Manuel Gil, Gaston H Gonnet, et al.
Molecular Biology and Evolution|December 14, 2011
ALF--a simulation framework for genome evolutionDaniel A Dalquen, Maria Anisimova, Gaston H Gonnet, et al.
Nucleic Acids Research|November 30, 2010
OMA 2011: orthology inference among 1000 complete genomesAdrian M Altenhoff, Adrian Schneider, Gaston H Gonnet, et al.
Plos One|March 2, 2013
The impact of gene duplication, insertion, deletion, lateral gene transfer and sequencing error on orthology inference: a simulation studyDaniel A Dalquen, Adrian M Altenhoff, Gaston H Gonnet, et al.
Bioinformatics (Oxford, England)|September 9, 2017
Orthologous Matrix (OMA) algorithm 2.0: more robust to asymmetric evolutionary rates and more scalable hierarchical orthologous group inferenceClément-Marie Train, Natasha M Glover, Gaston H Gonnet, et al.
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