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Biorxiv : the Preprint Server for Biology|January 9, 2026
The Algorithm for Reversible Jump Inference of MotifsAli M Farhat, Lydia FreddolinoAnnual Review of Cell and Developmental Biology|May 8, 2012
Beyond homeostasis: a predictive-dynamic framework for understanding cellular behaviorLydia Freddolino, Saeed TavazoieThe Journal of Physical Chemistry. B|May 5, 2017
Deficiencies in Molecular Dynamics Simulation-Based Prediction of Protein-DNA Binding Free Energy LandscapesMorteza Khabiri, Lydia FreddolinoPlos Biology|July 29, 2024
FURNA: A database for functional annotations of RNA structuresChengxin Zhang, Lydia FreddolinoBriefings in Bioinformatics|July 22, 2024
A large-scale assessment of sequence database search tools for homology-based protein function predictionChengxin Zhang, Lydia FreddolinoBiorxiv : the Preprint Server for Biology|January 8, 2024
FURNA: a database for function annotations of RNA structuresChengxin Zhang, P Lydia FreddolinoBiorxiv : the Preprint Server for Biology|November 28, 2023
A large-scale assessment of sequence database search tools for homology-based protein function predictionChengxin Zhang, P Lydia FreddolinoMolecular Microbiology|February 19, 2025
Polyphosphate: The "Dark Matter" of Bacterial Chromatin StructureLisa R Racki, Lydia FreddolinoEcosal Plus|June 12, 2024
Spatio-temporal organization of the E. coli chromosome from base to cellular length scalesSonya K Royzenblat, Lydia FreddolinoMbio|February 14, 2023
Escherichia coli Leucine-Responsive Regulatory Protein Bridges DNA In Vivo and Tunably Dissociates in the Presence of Exogenous LeucineChristine A Ziegler, Lydia FreddolinoPageof 9