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Methods in Molecular Biology (Clifton, N.J.)|August 18, 2020
Predicting Host Phenotype Based on Gut Microbiome Using a Convolutional Neural Network ApproachDerek Reiman, Ali M Farhat, Yang DaiScience Advances|November 12, 2020
Persistent epigenetic reprogramming of sweet taste by dietAnoumid Vaziri, Morteza Khabiri, Brendan T Genaw, et al.Mbio|March 15, 2022
Epistasis at the SARS-CoV-2 Receptor-Binding Domain Interface and the Propitiously Boring Implications for Vaccine EscapeNash D Rochman, Guilhem Faure, Yuri I Wolf, et al.Biorxiv : the Preprint Server for Biology|December 3, 2025
LsrL modulates Lsr2-induced chromatin structure to tune biosynthetic gene cluster regulation in Streptomyces venezuelaeVivian Ramirez, Lauren Tiller, Marcin Jan Szafran, et al.The Journal of Biological Chemistry|February 27, 2025
Viperin expression leads to downregulation of mitochondrial genes through misincorporation of ddhCTP by mitochondrial RNA polymeraseSrijoni Majhi, Pronay Roy, Minshik Jo, et al.Journal of Chemical Information and Modeling|July 28, 2023
VMD as a Platform for Interactive Small Molecule Preparation and Visualization in Quantum and Classical SimulationsMariano Spivak, John E Stone, João Ribeiro, et al.Journal of Computational Chemistry|September 27, 2007
Accelerating molecular modeling applications with graphics processorsJohn E Stone, James C Phillips, Lydia Freddolino, et al.Cell Reports|November 19, 2023
Deep mutational scanning highlights a role for cytosolic regions in Hrd1 functionBrian G Peterson, Jiwon Hwang, Jennifer E Russ, et al.Biorxiv : the Preprint Server for Biology|September 2, 2025
Conserved Heterochromatin-like Structures with Local Regulators Mediate the Iron Stress Response in MycobacteriaAlyssa M Ekdahl, Agata Turula, Jeremy W Schroeder, et al.Biorxiv : the Preprint Server for Biology|July 9, 2024
Multiscale regulation of nutrient stress responses in Escherichia coli from chromatin structure to small regulatory RNAsAlyssa M Ekdahl, Tatiana Julien, Sahana Suraj, et al.Pageof 9