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Proceedings of the National Academy of Sciences of the United States of America|December 16, 2021
Single-cell quantification of a broad RNA spectrum reveals unique noncoding patterns associated with cell types and statesAlina Isakova, Norma Neff, Stephen R Quake
The Journal of Biological Chemistry|February 26, 2016
Quantification of Cooperativity in Heterodimer-DNA Binding Improves the Accuracy of Binding Specificity ModelsAlina Isakova, Yves Berset, Vassily Hatzimanikatis, et al.
Proceedings of the National Academy of Sciences of the United States of America|September 26, 2020
A mouse tissue atlas of small noncoding RNAAlina Isakova, Tobias Fehlmann, Andreas Keller, et al.
Nature Methods|March 18, 2026
CellVoyager: AI CompBio agent generates new insights by autonomously analyzing biological dataSamuel Alber, Bowen Chen, Eric Sun, et al.
Nature Methods|March 13, 2026
Connectome-seq: high-throughput mapping of neuronal connectivity at single-synapse resolution via barcode sequencingDanping Chen, Alina Isakova, Zhou Wan, et al.
Molecular Biotechnology|September 12, 2022
Application of an Autoinduction Strategy to Optimize the Heterologous Production of an Antitumor Bispecific Fusion Protein Based on the TRAIL Receptor-Selective Mutant Variant in Escherichia coliAlina Isakova, Artem Artykov, Yekaterina Vorontsova, et al.
Biorxiv : the Preprint Server for Biology|October 1, 2025
Connectome-seq: High-throughput Mapping of Neuronal Connectivity at Single-Synapse Resolution via Barcode SequencingDanping Chen, Alina Isakova, Zhou Joe Wan, et al.
Nucleic Acids Research|May 2, 2020
miRSwitch: detecting microRNA arm shift and switch eventsFabian Kern, Jeremy Amand, Ilya Senatorov, et al.
Molecular Cell|April 24, 2012
Integrative genomics identifies the corepressor SMRT as a gatekeeper of adipogenesis through the transcription factors C/EBPβ and KAISOSunil K Raghav, Sebastian M Waszak, Irina Krier, et al.
Nature Medicine|September 15, 2020
Single-cell transcriptomic atlas of the human endometrium during the menstrual cycleWanxin Wang, Felipe Vilella, Pilar Alama, et al.
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