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Algorithms for Molecular Biology : AMB|March 3, 2024
SparseRNAfolD: optimized sparse RNA pseudoknot-free folding with dangle considerationMateo Gray, Sebastian Will, Hosna JabbariBMC Bioinformatics|May 3, 2022
KnotAli: informed energy minimization through the use of evolutionary informationMateo Gray, Sean Chester, Hosna JabbariACS Combinatorial Science|September 9, 2015
Computational Approaches to Nucleic Acid OrigamiHosna Jabbari, Maral Aminpour, Carlo MontemagnoPlos One|April 6, 2018
RNA secondary structure prediction with pseudoknots: Contribution of algorithm versus energy modelHosna Jabbari, Ian Wark, Carlo MontemagnoJournal of Computational Biology : a Journal of Computational Molecular Cell Biology|June 16, 2009
An O(n(5)) algorithm for MFE prediction of kissing hairpins and 4-chains in nucleic acidsHo-Lin Chen, Anne Condon, Hosna JabbariScientific Data|May 5, 2026
A reliable and verified dataset of functional miRNA-mRNA target interactions for gene regulation studiesLacey Haddon, Lara K Mahal, Hosna JabbariBioinformatics (Oxford, England)|June 6, 2018
Knotty: efficient and accurate prediction of complex RNA pseudoknot structuresHosna Jabbari, Ian Wark, Carlo Montemagno, et al.IEEE/ACM Transactions on Computational Biology and Bioinformatics|February 12, 2024
DinoKnot: Duplex Interaction of Nucleic Acids With PseudoKnotsTara Newman, Hiu Fung Kevin Chang, Hosna JabbariMolecular Vision|July 4, 2014
Generation of a foveomacular transcriptomeAlison Ziesel, Steven Bernstein, Paul W WongPlos Computational Biology|February 28, 2023
Shapify: Paths to SARS-CoV-2 frameshifting pseudoknotLuke Trinity, Ian Wark, Lance Lansing, et al.Pageof 4