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Methods in Molecular Biology (Clifton, N.J.)|May 12, 2019
Visualization of Mass Cytometry Signal Background to Enable Optimal Core Panel Customization and Signal Threshold GatingAmelia Au-Yeung, Chikara Takahashi, W Rodney Mathews, et al.Cytometry. Part a : the Journal of the International Society for Analytical Cytology|September 16, 2016
Mass cytometry panel optimization through the designed distribution of signal interferenceChikara Takahashi, Amelia Au-Yeung, Franklin Fuh, et al.Frontiers in Immunology|June 25, 2019
Quantitative Comparison of Conventional and t-SNE-guided Gating AnalysesShadi Toghi Eshghi, Amelia Au-Yeung, Chikara Takahashi, et al.Plos One|December 31, 2021
Transcriptomic profiling of adjuvant colorectal cancer identifies three key prognostic biological processes and a disease specific role for granzyme BAnneleen Daemen, Akshata R Udyavar, Thomas Sandmann, et al.Frontiers in Immunology|June 29, 2026
A single-cell atlas of ulcerative colitis reveals neutrophil-stromal circuits linked to biologic therapy resistanceShadi Toghi Eshghi, John Mark Gubatan, Parisa Mazrooei, et al.Immunity|March 9, 2022
Mechanistic convergence of the TIGIT and PD-1 inhibitory pathways necessitates co-blockade to optimize anti-tumor CD8<sup>+</sup> T cell responsesKarl L Banta, Xiaozheng Xu, Avantika S Chitre, et al.Nucleic Acids Research|December 15, 2024
A comprehensive analysis framework for evaluating commercial single-cell RNA sequencing technologiesMarco De Simone, Jonathan Hoover, Julia Lau, et al.Cancer Cell|February 26, 2022
Intratumoral plasma cells predict outcomes to PD-L1 blockade in non-small cell lung cancerNamrata S Patil, Barzin Y Nabet, Sören Müller, et al.Journal for Immunotherapy of Cancer|April 8, 2021
Intratumoral CD103+ CD8+ T cells predict response to PD-L1 blockadeRomain Banchereau, Avantika S Chitre, Alexis Scherl, et al.Nature|February 28, 2020
Peripheral T cell expansion predicts tumour infiltration and clinical responseThomas D Wu, Shravan Madireddi, Patricia E de Almeida, et al.Pageof 2