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Ameya Harmalkar

Showing results (1-10 of 14) with videos related to

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Current Opinion in Structural Biology|December 28, 2020
Advances to tackle backbone flexibility in protein dockingAmeya Harmalkar, Jeffrey J Gray
Biorxiv : the Preprint Server for Biology|August 7, 2023
Reliable protein-protein docking with AlphaFold, Rosetta, and replica-exchangeAmeya Harmalkar, Sergey Lyskov, Jeffrey J Gray
Elife|May 27, 2025
Reliable protein-protein docking with AlphaFold, Rosetta, and replica exchangeAmeya Harmalkar, Sergey Lyskov, Jeffrey J Gray
Plos Computational Biology|June 3, 2022
Induced fit with replica exchange improves protein complex structure predictionAmeya Harmalkar, Sai Pooja Mahajan, Jeffrey J Gray
Biorxiv : the Preprint Server for Biology|July 19, 2024
Advancing membrane-associated protein docking with improved sampling and scoring in RosettaRituparna Samanta, Ameya Harmalkar, Priyamvada Prathima, et al.
Journal of Chemical Theory and Computation|November 22, 2024
Advancing Membrane-Associated Protein Docking with Improved Sampling and Scoring in RosettaRituparna Samanta, Ameya Harmalkar, Priyamvada Prathima, et al.
Protein Science : a Publication of the Protein Society|December 26, 2023
Flexible protein-protein docking with a multitrack iterative transformerLee-Shin Chu, Jeffrey A Ruffolo, Ameya Harmalkar, et al.
Biorxiv : the Preprint Server for Biology|July 10, 2023
Flexible Protein-Protein Docking with a Multi-Track Iterative TransformerLee-Shin Chu, Jeffrey A Ruffolo, Ameya Harmalkar, et al.
Proteins|September 22, 2025
Docking With Rosetta and Deep Learning Approaches in CAPRI Rounds 47-55Ameya Harmalkar, Lee-Shin Chu, Samuel W Canner, et al.
Mbio|September 21, 2021
Colicin-Mediated Transport of DNA through the Iron Transporter FepARuth Cohen-Khait, Ameya Harmalkar, Phuong Pham, et al.
Pageof 2

Showing results (1-10 of 14) with videos related to

Sort By:
Pageof 2
Current Opinion in Structural Biology|December 28, 2020
Advances to tackle backbone flexibility in protein dockingAmeya Harmalkar, Jeffrey J Gray
Biorxiv : the Preprint Server for Biology|August 7, 2023
Reliable protein-protein docking with AlphaFold, Rosetta, and replica-exchangeAmeya Harmalkar, Sergey Lyskov, Jeffrey J Gray
Elife|May 27, 2025
Reliable protein-protein docking with AlphaFold, Rosetta, and replica exchangeAmeya Harmalkar, Sergey Lyskov, Jeffrey J Gray
Plos Computational Biology|June 3, 2022
Induced fit with replica exchange improves protein complex structure predictionAmeya Harmalkar, Sai Pooja Mahajan, Jeffrey J Gray
Biorxiv : the Preprint Server for Biology|July 19, 2024
Advancing membrane-associated protein docking with improved sampling and scoring in RosettaRituparna Samanta, Ameya Harmalkar, Priyamvada Prathima, et al.
Journal of Chemical Theory and Computation|November 22, 2024
Advancing Membrane-Associated Protein Docking with Improved Sampling and Scoring in RosettaRituparna Samanta, Ameya Harmalkar, Priyamvada Prathima, et al.
Protein Science : a Publication of the Protein Society|December 26, 2023
Flexible protein-protein docking with a multitrack iterative transformerLee-Shin Chu, Jeffrey A Ruffolo, Ameya Harmalkar, et al.
Biorxiv : the Preprint Server for Biology|July 10, 2023
Flexible Protein-Protein Docking with a Multi-Track Iterative TransformerLee-Shin Chu, Jeffrey A Ruffolo, Ameya Harmalkar, et al.
Proteins|September 22, 2025
Docking With Rosetta and Deep Learning Approaches in CAPRI Rounds 47-55Ameya Harmalkar, Lee-Shin Chu, Samuel W Canner, et al.
Mbio|September 21, 2021
Colicin-Mediated Transport of DNA through the Iron Transporter FepARuth Cohen-Khait, Ameya Harmalkar, Phuong Pham, et al.
Pageof 2