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IEEE/ACM Transactions on Computational Biology and Bioinformatics|October 31, 2009
Assessing the discordance of multiple sequence alignmentsAmol Prakash, Martin TompaGenome Biology|June 28, 2007
Measuring the accuracy of genome-size multiple alignmentsAmol Prakash, Martin TompaBioinformatics (Oxford, England)|June 18, 2005
Statistics of local multiple alignmentsAmol Prakash, Martin TompaNature Biotechnology|October 8, 2005
Discovery of regulatory elements in vertebrates through comparative genomicsAmol Prakash, Martin TompaNucleic Acids Research|December 20, 2002
Discovery of novel transcription factor binding sites by statistical overrepresentationSaurabh Sinha, Martin TompaNucleic Acids Research|July 18, 2006
MicroFootPrinter: a tool for phylogenetic footprinting in prokaryotic genomesShane Neph, Martin TompaNature Biotechnology|May 25, 2010
Comparative assessment of methods for aligning multiple genome sequencesXiaoyu Chen, Martin TompaNucleic Acids Research|June 26, 2003
YMF: A program for discovery of novel transcription factor binding sites by statistical overrepresentationSaurabh Sinha, Martin TompaNucleic Acids Research|June 26, 2003
FootPrinter: A program designed for phylogenetic footprintingMathieu Blanchette, Martin TompaGenome Research|May 9, 2002
Discovery of regulatory elements by a computational method for phylogenetic footprintingMathieu Blanchette, Martin TompaPageof 8