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IEEE/ACM Transactions on Computational Biology and Bioinformatics|April 4, 2023
Improved Node and Arc Multiplicity Estimation in De Bruijn Graphs Using Approximate Inference in Conditional Random FieldsAranka Steyaert, Pieter Audenaert, Jan FostierBMC Bioinformatics|September 15, 2020
Accurate determination of node and arc multiplicities in de bruijn graphs using conditional random fieldsAranka Steyaert, Pieter Audenaert, Jan FostierPlos One|April 27, 2013
The index-based subgraph matching algorithm (ISMA): fast subgraph enumeration in large networks using optimized search treesSofie Demeyer, Tom Michoel, Jan Fostier, et al.Bioinformatics (Oxford, England)|May 5, 2017
OMSim: a simulator for optical map dataGiles Miclotte, Stéphane Plaisance, Stephane Rombauts, et al.Algorithms for Molecular Biology : AMB|May 6, 2016
Jabba: hybrid error correction for long sequencing readsGiles Miclotte, Mahdi Heydari, Piet Demeester, et al.Bioinformatics (Oxford, England)|August 9, 2015
BLSSpeller: exhaustive comparative discovery of conserved cis-regulatory elementsDieter De Witte, Jan Van de Velde, Dries Decap, et al.BMC Bioinformatics|March 14, 2020
BLAMM: BLAS-based algorithm for finding position weight matrix occurrences in DNA sequences on CPUs and GPUsJan FostierFrontiers in Genetics|January 11, 2020
High-Dimensional Bayesian Network Inference From Systems Genetics Data Using Genetic Node OrderingLingfei Wang, Pieter Audenaert, Tom MichoelBioinformatics (Oxford, England)|November 30, 2017
Efficiently counting all orbits of graphlets of any order in a graph using autogenerated equationsIne Melckenbeeck, Pieter Audenaert, Didier Colle, et al.Plos One|August 26, 2025
Generating random graphs with prescribed graphlet frequency bounds derived from probabilistic networksBram Mornie, Didier Colle, Pieter Audenaert, et al.Pageof 6