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Methods in Cell Biology|November 27, 2018
BET-seq: Binding energy topographies revealed by microfluidics and high-throughput sequencingArjun K Aditham, Tyler C Shimko, Polly M FordyceProceedings of the National Academy of Sciences of the United States of America|March 29, 2018
Comprehensive, high-resolution binding energy landscapes reveal context dependencies of transcription factor bindingDaniel D Le, Tyler C Shimko, Arjun K Aditham, et al.Bioinformatics (Oxford, England)|March 17, 2020
DeCoDe: degenerate codon design for complete protein-coding DNA librariesTyler C Shimko, Polly M Fordyce, Yaron OrensteinNature Communications|January 13, 2025
Mutations to transcription factor MAX allosterically increase DNA selectivity by altering folding and binding pathwaysRenee Hastings, Arjun K Aditham, Nicole DelRosso, et al.Cell Systems|December 19, 2020
High-Throughput Affinity Measurements of Transcription Factor and DNA Mutations Reveal Affinity and Specificity DeterminantsArjun K Aditham, Craig J Markin, Daniel A Mokhtari, et al.Hardwarex|September 18, 2018
An Open-Source, Programmable Pneumatic Setup for Operation and Automated Control of Single- and Multi-Layer Microfluidic DevicesKara Brower, Robert Puccinelli, Craig J Markin, et al.Plos One|October 21, 2014
COPASutils: an R package for reading, processing, and visualizing data from COPAS large-particle flow cytometersTyler C Shimko, Erik C AndersenLab on a Chip|November 9, 2019
micrIO: an open-source autosampler and fraction collector for automated microfluidic input-outputScott A Longwell, Polly M FordyceBiorxiv : the Preprint Server for Biology|November 24, 2025
Large field of view fluorescence imaging of microfluidic devices with a tandem-lens macroscope†Daniel A Mokhtari, Ali Lashkaripour, Polly M FordyceJournal of Visualized Experiments : Jove|February 13, 2017
Multi-step Variable Height Photolithography for Valved Multilayer Microfluidic DevicesKara Brower, Adam K White, Polly M FordycePageof 7