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Plos Genetics|August 10, 2006
Anatomic demarcation by positional variation in fibroblast gene expression programsJohn L Rinn, Chanda Bondre, Hayes B Gladstone, et al.Nature Biotechnology|December 11, 2012
Differential analysis of gene regulation at transcript resolution with RNA-seqCole Trapnell, David G Hendrickson, Martin Sauvageau, et al.Nucleic Acids Research|April 18, 2015
Integrative genomic analysis reveals widespread enhancer regulation by p53 in response to DNA damageScott T Younger, Daniela Kenzelmann-Broz, Heiyoun Jung, et al.Proceedings of the National Academy of Sciences of the United States of America|August 28, 2019
Single-cell imaging reveals unexpected heterogeneity of telomerase reverse transcriptase expression across human cancer cell linesTeisha J Rowland, Gabrijela Dumbović, Evan P Hass, et al.Nature Methods|June 13, 2017
Visualizing adenosine-to-inosine RNA editing in single mammalian cellsIan A Mellis, Rohit Gupte, Arjun Raj, et al.Elife|December 7, 2020
Gene regulation gravitates toward either addition or multiplication when combining the effects of two signalsEric M Sanford, Benjamin L Emert, Allison Coté, et al.Nature Structural & Molecular Biology|January 28, 2014
Topological organization of multichromosomal regions by the long intergenic noncoding RNA FirreEzgi Hacisuleyman, Loyal A Goff, Cole Trapnell, et al.Genome Research|August 26, 2025
Widespread specific intron-retention events in nuclear RNA complexes identified by sedimentation analysis of pluripotent cellular extractsIsabela T Pereira, Izabela Mamede, Paulo de Paiva Amaral, et al.Cell Genomics|February 23, 2023
ClonoCluster: A method for using clonal origin to inform transcriptome clusteringLee P Richman, Yogesh Goyal, Connie L Jiang, et al.Nature|February 19, 2010
Variability in gene expression underlies incomplete penetranceArjun Raj, Scott A Rifkin, Erik Andersen, et al.Pageof 27