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Peerj|December 18, 2019
consensusDE: an R package for assessing consensus of multiple RNA-seq algorithms with RUV correctionAshley J Waardenberg, Matthew A FieldBMC Bioinformatics|September 3, 2015
CompGO: an R package for comparing and visualizing Gene Ontology enrichment differences between DNA binding experimentsAshley J Waardenberg, Maya Bassett, Romaric Bouveret, et al.Cold Spring Harbor Perspectives in Medicine|October 5, 2014
Genetic networks governing heart developmentAshley J Waardenberg, Mirana Ramialison, Romaric Bouveret, et al.BMC Systems Biology|October 24, 2008
Using a 3D virtual muscle model to link gene expression changes during myogenesis to protein spatial location in muscleAshley J Waardenberg, Antonio Reverter, Christine A Wells, et al.Open Biology|September 30, 2016
Prediction and validation of protein-protein interactors from genome-wide DNA-binding data using a knowledge-based machine-learning approachAshley J Waardenberg, Bernou Homan, Stephanie Mohamed, et al.Frontiers in Immunology|April 9, 2020
An Analytically and Diagnostically Sensitive RNA Extraction and RT-qPCR Protocol for Peripheral Blood Mononuclear CellsDaniel J Browne, Jamie L Brady, Ashley J Waardenberg, et al.BMC Systems Biology|February 26, 2017
Progesterone signalling in broiler skeletal muscle is associated with divergent feed efficiencyWalter Bottje, Byung-Whi Kong, Antonio Reverter, et al.Molecular & Cellular Proteomics : MCP|December 25, 2015
Reactive Oxygen Species (ROS)-Activated ATM-Dependent Phosphorylation of Cytoplasmic Substrates Identified by Large-Scale Phosphoproteomics ScreenSergei V Kozlov, Ashley J Waardenberg, Kasper Engholm-Keller, et al.Science Advances|March 18, 2020
A systematic approach to simultaneously evaluate safety, immunogenicity, and efficacy of novel tuberculosis vaccination strategiesVisai Muruganandah, Harindra D Sathkumara, Saparna Pai, et al.Genomics|February 13, 2017
Analysis of steric effects in DamID profiling of transcription factor target genesMirana Ramialison, Ashley J Waardenberg, Nicole Schonrock, et al.Pageof 4