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Journal of Computational Chemistry|May 19, 2016
Compressing molecular dynamics trajectories: Breaking the one-bit-per-sample barrierJan Huwald, Stephan Richter, Bashar Ibrahim, et al.
Methods in Molecular Biology (Clifton, N.J.)|April 5, 2019
Spatial Rule-Based Simulations: The SRSim SoftwareRichard Henze, Gerd Grünert, Bashar Ibrahim, et al.
Bio Systems|August 2, 2019
Combining evolution and self-organization to find natural Boolean representations in unconventional computational mediaMatthew D Egbert, Gerd Gruenert, Bashar Ibrahim, et al.
Bio Systems|December 3, 2014
Structural analysis of in silico mutant experiments of human inner-kinetochore structureRichard Henze, Jan Huwald, Nelly Mostajo, et al.
Plos One|October 17, 2012
Cycles and the qualitative evolution of chemical systemsPeter Kreyssig, Gabi Escuela, Bryan Reynaert, et al.
BMC Bioinformatics|June 10, 2010
Rule-based spatial modeling with diffusing, geometrically constrained moleculesGerd Gruenert, Bashar Ibrahim, Thorsten Lenser, et al.
International Journal of Neural Systems|December 6, 2014
Understanding Networks of Computing Chemical Droplet Neurons Based on Information FlowGerd Gruenert, Konrad Gizynski, Gabi Escuela, et al.
Bioinformatics (Oxford, England)|August 28, 2014
Effects of small particle numbers on long-term behaviour in discrete biochemical systemsPeter Kreyssig, Christian Wozar, Stephan Peter, et al.
Cells|April 9, 2014
Spatial rule-based modeling: a method and its application to the human mitotic kinetochoreBashar Ibrahim, Richard Henze, Gerd Gruenert, et al.
Molecular Systems Biology|May 15, 2012
A dynamical model of the spindle position checkpointAyse Koca Caydasi, Maiko Lohel, Gerd Grünert, et al.
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