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Methods in Molecular Biology (Clifton, N.J.)|April 28, 2022
Site-wise Diversification of Combinatorial Libraries Using Insights from Structure-guided Stability CalculationsBenedikt Dolgikh, Daniel Woldring
Methods in Molecular Biology (Clifton, N.J.)|April 28, 2022
Ancestral Sequence Reconstruction and Alternate Amino Acid States Guide Protein Library Design for Directed EvolutionJames VanAntwerp, Patrick Finneran, Benedikt Dolgikh, et al.
Biorxiv : the Preprint Server for Biology|December 15, 2025
Tuning Yeast Glycosylation Proximal to the FLS2-flg22 Binding Interface enables Functional Yeast Surface Display under Induced ER StressBenedikt Dolgikh, Samantha Schulte, Daniel R Woldring
Methods in Molecular Biology (Clifton, N.J.)|April 28, 2022
Machine Learning-driven Protein Library Design: A Path Toward Smarter LibrariesMehrsa Mardikoraem, Daniel Woldring
Pharmaceutics|May 27, 2023
Protein Fitness Prediction Is Impacted by the Interplay of Language Models, Ensemble Learning, and Sampling MethodsMehrsa Mardikoraem, Daniel Woldring
Briefings in Bioinformatics|October 21, 2023
Generative models for protein sequence modeling: recent advances and future directionsMehrsa Mardikoraem, Zirui Wang, Nathaniel Pascual, et al.
Bioengineering (Basel, Switzerland)|February 24, 2022
Design and Evaluation of Engineered Extracellular Vesicle (EV)-Based Targeting for EGFR-Overexpressing Tumor Cells Using Monobody DisplayHiroaki Komuro, Shakhlo Aminova, Katherine Lauro, et al.
Methods in Molecular Biology (Clifton, N.J.)|July 5, 2023
Single-Cell B-Cell Sequencing to Generate Natively Paired scFab Yeast Surface Display LibrariesNathaniel Pascual, Theodore Belecciu, Sam Schmidt, et al.
Journal of Biomolecular Structure & Dynamics|August 22, 2022
Phytochemical drug discovery for COVID-19 using high-resolution computational docking and machine learning assisted binder predictionZirui Wang, Theodore Belecciu, Joelle Eaves, et al.
Plos One|December 2, 2024
RecombiCraft library construction: A novel method for DNA library cloning and expansion using non-enzymatic single-step DNA recombination and liquid cultureYuki Kawai-Harada, Mehrsa Mardikoraem, Katherine Lauro, et al.
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