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Biorxiv : the Preprint Server for Biology|June 19, 2024
Effects of selection stringency on the outcomes of directed evolutionBerk A Alpay, Michael M DesaiPlos One|October 14, 2024
Effects of selection stringency on the outcomes of directed evolutionBerk A Alpay, Michael M DesaiGenetics|April 21, 2026
Amino acid exchangeability and surface accessibility underpin the effects of single substitutionsBerk A Alpay, Piyush Nanda, Emma Nagy, et al.Drug Discovery Today|September 17, 2022
Evaluating molecular fingerprint-based models of drug side effects against a statistical controlBerk A Alpay, Mark Gosink, Derek AguiarBioinformatics (Oxford, England)|July 14, 2020
Combinatorial and statistical prediction of gene expression from haplotype sequenceBerk A Alpay, Pinar Demetci, Sorin Istrail, et al.Blood Neoplasia|June 2, 2025
Comparison of <i>TP53</i> mutations in myelodysplasia and acute leukemia suggests divergent roles in initiation and progressionAshwini Jambhekar, Emily E Ackerman, Berk A Alpay, et al.Medrxiv : the Preprint Server for Health Sciences|September 21, 2023
Comparison of <i>TP53</i> Mutations in Myelodysplasia and Acute Leukemia Suggests Divergent Roles in Initiation and ProgressionAshwini Jambhekar, Emily E Ackerman, Berk A Alpay, et al.Genetics|September 5, 2013
The dynamics of genetic draft in rapidly adapting populationsKatya Kosheleva, Michael M DesaiElife|March 29, 2021
Global epistasis emerges from a generic model of a complex traitGautam Reddy, Michael M DesaiMolecular Biology and Evolution|October 26, 2017
Recombination Alters the Dynamics of Adaptation on Standing Variation in Laboratory Yeast PopulationsKatya Kosheleva, Michael M DesaiPageof 10