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Cell Systems|May 15, 2017
PROBer Provides a General Toolkit for Analyzing Sequencing-Based Toeprinting AssaysBo Li, Akshay Tambe, Sharon Aviran, et al.BMC Bioinformatics|January 19, 2019
Barcode identification for single cell genomicsAkshay Tambe, Lior PachterRNA (New York, N.Y.)|October 22, 2014
Rational experiment design for sequencing-based RNA structure mappingSharon Aviran, Lior PachterCurrent Protocols in Chemical Biology|June 22, 2013
SHAPE-Seq: High-Throughput RNA Structure AnalysisStefanie A Mortimer, Cole Trapnell, Sharon Aviran, et al.Journal of Comparative Physiology. A, Neuroethology, Sensory, Neural, and Behavioral Physiology|August 29, 2025
A plea for academic truthLior PachterProceedings of the National Academy of Sciences of the United States of America|June 7, 2011
Multiplexed RNA structure characterization with selective 2'-hydroxyl acylation analyzed by primer extension sequencing (SHAPE-Seq)Julius B Lucks, Stefanie A Mortimer, Cole Trapnell, et al.Proceedings of the National Academy of Sciences of the United States of America|June 7, 2011
Modeling and automation of sequencing-based characterization of RNA structureSharon Aviran, Cole Trapnell, Julius B Lucks, et al.Nature Methods|November 20, 2012
Streaming fragment assignment for real-time analysis of sequencing experimentsAdam Roberts, Lior PachterBriefings in Bioinformatics|May 11, 2002
The computational challenges of applying comparative-based computational methods to whole genomesInna Dubchak, Lior PachterPageof 1,086