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SIAM Journal on Scientific Computing : a Publication of the Society for Industrial and Applied Mathematics|February 14, 2017
MOLNs: A CLOUD PLATFORM FOR INTERACTIVE, REPRODUCIBLE, AND SCALABLE SPATIAL STOCHASTIC COMPUTATIONAL EXPERIMENTS IN SYSTEMS BIOLOGY USING PyURDMEBrian Drawert, Michael Trogdon, Salman Toor, et al.
Journal of Computational Physics|February 12, 2016
Local error estimates for adaptive simulation of the Reaction-Diffusion Master Equation via operator splittingAndreas Hellander, Michael J Lawson, Brian Drawert, et al.
The Journal of Chemical Physics|November 17, 2016
A framework for discrete stochastic simulation on 3D moving boundary domainsBrian Drawert, Stefan Hellander, Michael Trogdon, et al.
BMC Systems Biology|June 26, 2012
URDME: a modular framework for stochastic simulation of reaction-transport processes in complex geometriesBrian Drawert, Stefan Engblom, Andreas Hellander
Physical Review. E, Statistical, Nonlinear, and Soft Matter Physics|March 14, 2015
Reaction rates for mesoscopic reaction-diffusion kineticsStefan Hellander, Andreas Hellander, Linda Petzold
The Journal of Chemical Physics|December 24, 2017
Mesoscopic-microscopic spatial stochastic simulation with automatic system partitioningStefan Hellander, Andreas Hellander, Linda Petzold
Physical Review. E, Statistical, Nonlinear, and Soft Matter Physics|June 12, 2012
Reaction-diffusion master equation in the microscopic limitStefan Hellander, Andreas Hellander, Linda Petzold
Journal of the Royal Society, Interface|April 3, 2015
Accuracy of the Michaelis-Menten approximation when analysing effects of molecular noiseMichael J Lawson, Linda Petzold, Andreas Hellander
IEEE Life Sciences Letters|June 21, 2017
GillesPy: A Python Package for Stochastic Model Building and SimulationJohn H Abel, Brian Drawert, Andreas Hellander, et al.
The Journal of Chemical Physics|February 23, 2010
The diffusive finite state projection algorithm for efficient simulation of the stochastic reaction-diffusion master equationBrian Drawert, Michael J Lawson, Linda Petzold, et al.
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