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Bioinformatics (Oxford, England)|April 27, 2007
TFmodeller: comparative modelling of protein-DNA complexesBruno Contreras-Moreira, Pierre-Alain Branger, Julio Collado-VidesBioinformatics (Oxford, England)|July 29, 2006
Comparative footprinting of DNA-binding proteinsBruno Contreras-Moreira, Julio Collado-VidesJournal of Molecular Biology|May 10, 2008
The role of DNA-binding specificity in the evolution of bacterial regulatory networksIrma Lozada-Chávez, Vladimir Espinosa Angarica, Julio Collado-Vides, et al.BMC Bioinformatics|October 17, 2008
Prediction of TF target sites based on atomistic models of protein-DNA complexesVladimir Espinosa Angarica, Abel González Pérez, Ana T Vasconcelos, et al.Theory in Biosciences = Theorie in Den Biowissenschaften|July 10, 2026
The allostery principle supports the symbolic character of signaling circuits: gene regulation provides a form of intelligence to living systemsJulio Collado-VidesIn Silico Biology|June 18, 2002
Operon conservation from the point of view of Escherichia coli, and inference of functional interdependence of gene products from genome contextGabriel Moreno-Hagelsieb, Julio Collado-VidesBioinformatics (Oxford, England)|August 10, 2002
A powerful non-homology method for the prediction of operons in prokaryotesGabriel Moreno-Hagelsieb, Julio Collado-VidesCurrent Opinion in Microbiology|October 24, 2003
Identifying global regulators in transcriptional regulatory networks in bacteriaAgustino Martínez-Antonio, Julio Collado-VidesJournal of Molecular Biology|October 8, 2003
Sigma70 promoters in Escherichia coli: specific transcription in dense regions of overlapping promoter-like signalsAraceli M Huerta, Julio Collado-VidesIndian Journal of Experimental Biology|July 10, 2004
Regulation of expression of symbiotic genes in Rhizobium sp. NGR234Xavier Perret, Hajime Kobayashi, Julio Collado-VidesPageof 19