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Protein Science : a Publication of the Protein Society|September 15, 2022
Simple mechanisms for the evolution of protein complexityArvind S Pillai, Georg K A Hochberg, Joseph W ThorntonNature Ecology & Evolution|July 27, 2025
The structure of an ancient genotype-phenotype map shaped the functional evolution of a protein familySantiago Herrera-Álvarez, Jaeda E J Patton, Joseph W ThorntonBiorxiv : the Preprint Server for Biology|February 20, 2025
Ancient biases in phenotype production drove the functional evolution of a protein familySantiago Herrera-Álvarez, Jaeda E J Patton, Joseph W ThorntonNucleic Acids Research|May 11, 2018
Dicer cleaves 5'-extended microRNA precursors originating from RNA polymerase II transcription start sitesPeike Sheng, Christopher Fields, Kelsey Aadland, et al.Plos Genetics|January 14, 2014
Vestigialization of an allosteric switch: genetic and structural mechanisms for the evolution of constitutive activity in a steroid hormone receptorJamie T Bridgham, June Keay, Eric A Ortlund, et al.Molecular Ecology Resources|November 8, 2019
pime: A package for discovery of novel differences among microbial communitiesLuiz Fernando W Roesch, Priscila T Dobbler, Victor S Pylro, et al.Current Opinion in Genetics & Development|November 12, 2025
Epistatic drift in protein evolutionRicardo Muñiz-Trejo, Jaeda Ej Patton, Santiago Herrera-Álvarez, et al.Science (New York, N.Y.)|August 19, 2007
Crystal structure of an ancient protein: evolution by conformational epistasisEric A Ortlund, Jamie T Bridgham, Matthew R Redinbo, et al.Nature|January 11, 2012
Evolution of increased complexity in a molecular machineGregory C Finnigan, Victor Hanson-Smith, Tom H Stevens, et al.Nature Ecology & Evolution|August 17, 2017
Experimental test and refutation of a classic case of molecular adaptation in Drosophila melanogasterMohammad A Siddiq, David W Loehlin, Kristi L Montooth, et al.Pageof 10