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Peerj|June 23, 2016
Sparc: a sparsity-based consensus algorithm for long erroneous sequencing readsChengxi Ye, Zhanshan Sam MaScientific Reports|August 31, 2016
DBG2OLC: Efficient Assembly of Large Genomes Using Long Erroneous Reads of the Third Generation Sequencing TechnologiesChengxi Ye, Christopher M Hill, Shigang Wu, et al.Genomics|December 31, 2018
Hybrid assembly of ultra-long Nanopore reads augmented with 10x-Genomics contigs: Demonstrated with a human genomeZhanshan Sam Ma, Lianwei Li, Chengxi Ye, et al.BMC Bioinformatics|April 28, 2012
Exploiting sparseness in de novo genome assemblyChengxi Ye, Zhanshan Sam Ma, Charles H Cannon, et al.Scientific Reports|February 6, 2015
Network analysis suggests a potentially 'evil' alliance of opportunistic pathogens inhibited by a cooperative network in human milk bacterial communitiesZhanshan Sam Ma, Qiong Guan, Chengxi Ye, et al.Frontiers in Microbiology|May 22, 2020
Assessing and Interpreting the Metagenome Heterogeneity With Power LawZhanshan Sam MaFrontiers in Microbiology|August 5, 2022
Shared Species Analysis, Augmented by Stochasticity Analysis, Is More Effective Than Diversity Analysis in Detecting Variations in the Gut MicrobiomesZhanshan Sam MaScientific Reports|May 10, 2018
Diversity time-period and diversity-time-area relationships exemplified by the human microbiomeZhanshan Sam MaEcology and Evolution|November 7, 2018
DAR (diversity-area relationship): Extending classic SAR (species-area relationship) for biodiversity and biogeography analysesZhanshan Sam MaPageof 9