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Iscience|October 17, 2022
A unified approach to sequential and non-sequential structure alignment of proteins, RNAs, and DNAsChengxin Zhang, Anna Marie PyleDatabase : the Journal of Biological Databases and Curation|April 3, 2023
PDC: a highly compact file format to store protein 3D coordinatesChengxin Zhang, Anna Marie PyleActa Crystallographica. Section D, Structural Biology|April 1, 2022
CSSR: assignment of secondary structure to coarse-grained RNA tertiary structuresChengxin Zhang, Anna Marie PyleJournal of Molecular Biology|June 25, 2023
rMSA: A Sequence Search and Alignment Algorithm to Improve RNA Structure ModelingChengxin Zhang, Yang Zhang, Anna Marie PyleBioinformatics (Oxford, England)|May 13, 2022
AMIGOS III: pseudo-torsion angle visualization and motif-based structure comparison of nucleic acidsMorgan Shine, Chengxin Zhang, Anna Marie PyleJournal of Molecular Biology|July 21, 2023
Arena: Rapid and Accurate Reconstruction of Full Atomic RNA Structures From Coarse-grained ModelsZion R Perry, Anna Marie Pyle, Chengxin ZhangNature Methods|August 29, 2022
US-align: universal structure alignments of proteins, nucleic acids, and macromolecular complexesChengxin Zhang, Morgan Shine, Anna Marie Pyle, et al.Current Opinion in Chemical Biology|August 25, 2011
RNA helicases and remodeling proteinsAnna Marie PyleCritical Reviews in Biochemistry and Molecular Biology|May 8, 2010
The tertiary structure of group II introns: implications for biological function and evolutionAnna Marie PyleAnnual Review of Biophysics|June 25, 2008
Translocation and unwinding mechanisms of RNA and DNA helicasesAnna Marie PylePageof 35