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Nucleic Acids Research|October 14, 2021
Prioritization of regulatory variants with tissue-specific function in the non-coding regions of human genomeShengcheng Dong, Alan P BoyleHuman Mutation|June 23, 2019
Predicting functional variants in enhancer and promoter elements using RegulomeDBShengcheng Dong, Alan P BoyleGenome Research|July 15, 2020
TRACE: transcription factor footprinting using chromatin accessibility data and DNA sequenceNingxin Ouyang, Alan P BoylePlos Genetics|August 7, 2024
Enhancing portability of trans-ancestral polygenic risk scores through tissue-specific functional genomic data integrationBradley Crone, Alan P BoyleNAR Genomics and Bioinformatics|March 3, 2021
F-Seq2: improving the feature density based peak caller with dynamic statisticsNanxiang Zhao, Alan P BoyleEpigenomics|June 2, 2010
High-resolution mapping studies of chromatin and gene regulatory elementsAlan P Boyle, Terrence S FureyTrends in Genetics : TIG|December 13, 2016
Mining the Unknown: Assigning Function to Noncoding Single Nucleotide PolymorphismsSierra S Nishizaki, Alan P BoyleBMC Bioinformatics|August 4, 2022
SEMplMe: a tool for integrating DNA methylation effects in transcription factor binding affinity predictionsSierra S Nishizaki, Alan P BoyleUltramicroscopy|October 31, 2015
Pattern matching approach to pseudosymmetry problems in electron backscatter diffractionGert Nolze, Aimo Winkelmann, Alan P BoyleBMC Bioinformatics|December 1, 2017
A proximity-based graph clustering method for the identification and application of transcription factor clustersMaxwell Spadafore, Kayvan Najarian, Alan P BoylePageof 8