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Methods (San Diego, Calif.)|January 18, 2025
SV-JIM, detailed pairwise structural variant calling using long-reads and genome assembliesClarence Todd, Lingling Jin, Ian McQuillanBMC Genomics|December 9, 2017
Computational identification of harmful mutation regions to the activity of transposable elementsLingling Jin, Ian McQuillan, Longhai LiProteomics|August 3, 2011
Speed improvements of peptide-spectrum matching using single-instruction multiple-data instructionsJian Zhang, Ian McQuillan, Fang-Xiang WuFrontiers in Genetics|September 6, 2021
Comparative Analyses of Gene Co-expression Networks: Implementations and Applications in the Study of EvolutionKatie Ovens, B Frank Eames, Ian McQuillanBMC Bioinformatics|March 17, 2021
Juxtapose: a gene-embedding approach for comparing co-expression networksKatie Ovens, Farhad Maleki, B Frank Eames, et al.Human Genomics|October 23, 2019
Size matters: how sample size affects the reproducibility and specificity of gene set analysisFarhad Maleki, Katie Ovens, Ian McQuillan, et al.Genes|October 23, 2021
Silver: Forging almost Gold Standard DatasetsFarhad Maleki, Katie Ovens, Ian McQuillan, et al.Briefings in Bioinformatics|July 17, 2026
Quantum bioinformatics: a systematic review of methods, trends, and challengesMehdi Khalaj, Steven Rayan, Lingling JinBioinformatics Advances|May 1, 2023
Predicting phenotypes from novel genomic markers using deep learningShivani Sehrawat, Keyhan Najafian, Lingling JinFrontiers in Physiology|March 20, 2023
Deciphering the functions of Stromal Interaction Molecule-1 in amelogenesis using AmelX-iCre miceRaed Said, Helyasadat Mortazavi, David Cooper, et al.Pageof 9