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BMC Bioinformatics|August 14, 2015
Amplitude spectrum distance: measuring the global shape divergence of protein fragmentsClovis Galiez, François Coste
Bioinformatics (Oxford, England)|January 7, 2016
VIRALpro: a tool to identify viral capsid and tail sequencesClovis Galiez, Christophe N Magnan, Francois Coste, et al.
Nature Communications|October 14, 2025
Empathi: embedding-based phage protein annotation tool by hierarchical assignmentAlexandre Boulay, Audrey Leprince, François Enault, et al.
Nature Communications|January 21, 2022
Nonlinear sensitivity of glacier mass balance to future climate change unveiled by deep learningJordi Bolibar, Antoine Rabatel, Isabelle Gouttevin, et al.
Bioinformatics (Oxford, England)|September 29, 2017
WIsH: who is the host? Predicting prokaryotic hosts from metagenomic phage contigsClovis Galiez, Matthias Siebert, François Enault, et al.
Bioinformatics (Oxford, England)|September 24, 2025
SPAED: harnessing AlphaFold output for accurate segmentation of phage endolysin domainsAlexandre Boulay, Emma Cremelie, Clovis Galiez, et al.
Bioinformatics (Oxford, England)|April 1, 2021
SpacePHARER: sensitive identification of phages from CRISPR spacers in prokaryotic hostsRuoshi Zhang, Milot Mirdita, Eli Levy Karin, et al.
Nucleic Acids Research|December 1, 2016
Uniclust databases of clustered and deeply annotated protein sequences and alignmentsMilot Mirdita, Lars von den Driesch, Clovis Galiez, et al.
Ecology Letters|May 2, 2026
Beyond Co-Occurrence: Multi-Scale Evidence for Segregation-Dominated Plant Networks in the French AlpsMatthias Rohr, Alexandre Wendling, Tamara Münkemüller, et al.
Database : the Journal of Biological Databases and Curation|June 5, 2026
PhaLP 2.0: extending the community-oriented phage lysin database with a SUBLYME pipeline for metagenomic discoveryAlexandre Boulay, Victor Németh, Bjorn Criel, et al.
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