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BMC Medicine|March 24, 2016
Interpreting whole genome sequencing for investigating tuberculosis transmission: a systematic reviewHollie-Ann Hatherell, Caroline Colijn, Helen R Stagg, et al.Wellcome Open Research|May 19, 2018
Evaluation of phylogenetic reconstruction methods using bacterial whole genomes: a simulation based studyJohn A Lees, Michelle Kendall, Julian Parkhill, et al.Journal of Computational Biology : a Journal of Computational Molecular Cell Biology|November 14, 2022
Genome-Wide Association with Uncertainty in the Genetic Similarity MatrixShijia Wang, Shufei Ge, Benjamin Sobkowiak, et al.Microbial Genomics|March 3, 2023
Epidemiological cluster identification using multiple data sources: an approach using logistic regressionKurnia Susvitasari, Paul F Tupper, Irving Cancino-Muños, et al.Plos One|May 19, 2012
Inferring carbon sources from gene expression profiles using metabolic flux modelsAaron Brandes, Desmond S Lun, Kuhn Ip, et al.Euro Surveillance : Bulletin Europeen Sur Les Maladies Transmissibles = European Communicable Disease Bulletin|October 8, 2021
Long time frames to detect the impact of changing COVID-19 measures, Canada, March to July 2020Jessica E Stockdale, Renny Doig, Joosung Min, et al.The Journal of Infection|March 12, 2013
Influenza and RSV make a modest contribution to invasive pneumococcal disease incidence in the UKEmily J Nicoli, Caroline L Trotter, Katherine M E Turner, et al.Journal of the Royal Society, Interface|November 27, 2009
What is the mechanism for persistent coexistence of drug-susceptible and drug-resistant strains of Streptococcus pneumoniae?Caroline Colijn, Ted Cohen, Christophe Fraser, et al.The ISME Journal|January 7, 2021
Negative frequency-dependent selection and asymmetrical transformation stabilise multi-strain bacterial population structuresGabrielle L Harrow, John A Lees, William P Hanage, et al.Infection, Genetics and Evolution : Journal of Molecular Epidemiology and Evolutionary Genetics in Infectious Diseases|August 2, 2023
The utility of SARS-CoV-2 genomic data for informative clustering under different epidemiological scenarios and samplingBenjamin Sobkowiak, Pouya Haghmaram, Natalie Prystajecky, et al.Pageof 15