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RNA (New York, N.Y.)|May 20, 2026
R3DCID: circular interaction diagrams for RNA/DNAPatrick Nyadjo Fonga, Syed Muhammed Abubaker, Joey Thaman, et al.Journal of Mathematical Biology|August 19, 2007
FR3D: finding local and composite recurrent structural motifs in RNA 3D structuresMichael Sarver, Craig L Zirbel, Jesse Stombaugh, et al.Viruses|March 31, 2018
Allelic RNA Motifs in Regulating Systemic Trafficking of Potato Spindle Tuber ViroidRyuta Takeda, Craig L Zirbel, Neocles B Leontis, et al.RNA (New York, N.Y.)|April 17, 2023
Anionic G•U pairs in bacterial ribosomal rRNAsEric Westhof, Zoe L Watson, Craig L Zirbel, et al.Nucleic Acids Research|May 30, 2013
R3D Align web server for global nucleotide to nucleotide alignments of RNA 3D structuresRyan R Rahrig, Anton I Petrov, Neocles B Leontis, et al.The Journal of Physical Chemistry. B|October 23, 2013
Isosteric and nonisosteric base pairs in RNA motifs: molecular dynamics and bioinformatics study of the sarcin-ricin internal loopMarek Havrila, Kamila Réblová, Craig L Zirbel, et al.Nucleic Acids Research|May 29, 2016
JAR3D Webserver: Scoring and aligning RNA loop sequences to known 3D motifsJames Roll, Craig L Zirbel, Blake Sweeney, et al.Plos Pathogens|March 22, 2022
Correction: A three-dimensional RNA motif mediates directional trafficking of Potato spindle tuber viroid from epidermal to palisade mesophyll cells in Nicotiana benthamianaJian Wu, Neocles B Leontis, Craig L Zirbel, et al.Plos Pathogens|October 24, 2019
A three-dimensional RNA motif mediates directional trafficking of Potato spindle tuber viroid from epidermal to palisade mesophyll cells in Nicotiana benthamianaJian Wu, Neocles B Leontis, Craig L Zirbel, et al.Nucleic Acids Research|November 12, 2023
The Nucleic Acid Knowledgebase: a new portal for 3D structural information about nucleic acidsCatherine L Lawson, Helen M Berman, Li Chen, et al.Pageof 4