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Molecular Biology and Evolution|November 11, 2005
Beyond pairwise distances: neighbor-joining with phylogenetic diversity estimatesDan Levy, Ruriko Yoshida, Lior PachterAlgorithms for Molecular Biology : AMB|May 2, 2008
On the optimality of the neighbor-joining algorithmKord Eickmeyer, Peter Huggins, Lior Pachter, et al.Journal of Comparative Physiology. A, Neuroethology, Sensory, Neural, and Behavioral Physiology|August 29, 2025
A plea for academic truthLior PachterNature Methods|November 20, 2012
Streaming fragment assignment for real-time analysis of sequencing experimentsAdam Roberts, Lior PachterBriefings in Bioinformatics|May 11, 2002
The computational challenges of applying comparative-based computational methods to whole genomesInna Dubchak, Lior PachterPhysical Review. E|September 18, 2020
Special function methods for bursty models of transcriptionGennady Gorin, Lior PachterGenome Medicine|November 25, 2011
RNA-Seq and find: entering the RNA deep fieldAdam Roberts, Lior PachterGenome Biology|April 8, 2006
Reference based annotation with GeneMapperSourav Chatterji, Lior PachterPlos Computational Biology|August 20, 2005
Bioinformatics for whole-genome shotgun sequencing of microbial communitiesKevin Chen, Lior PachterPageof 37