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IEEE/ACM Transactions on Computational Biology and Bioinformatics|November 13, 2010
A fast algorithm for computing geodesic distances in tree spaceMegan Owen, J Scott ProvanIEEE/ACM Transactions on Computational Biology and Bioinformatics|October 19, 2006
Optimizing multiple seeds for protein homology searchDaniel G BrownPlos One|June 23, 2023
Geodesics to characterize the phylogenetic landscapeMarzieh Khodaei, Megan Owen, Peter BeerliBMC Bioinformatics|February 4, 2010
Decoding HMMs using the k best paths: algorithms and applicationsDaniel G Brown, Daniil GolodJournal of Bioinformatics and Computational Biology|July 28, 2009
A tutorial of techniques for improving standard Hidden Markov Model algorithmsDaniil Golod, Daniel G BrownPacific Symposium on Biocomputing. Pacific Symposium on Biocomputing|February 21, 2013
LSHPlace: fast phylogenetic placement using locality-sensitive hashingDaniel G Brown, Jakub TruszkowskiAlgorithms for Molecular Biology : AMB|July 16, 2013
Fast half-sibling population reconstruction: theory and algorithmsDaniel Dexter, Daniel G BrownBMC Bioinformatics|February 4, 2010
New decoding algorithms for Hidden Markov Models using distance measures on labellingsDaniel G Brown, Jakub TruszkowskiBMC Bioinformatics|May 19, 2011
More accurate recombination prediction in HIV-1 using a robust decoding algorithm for HMMsJakub Truszkowski, Daniel G BrownPageof 7