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Annual Review of Biophysics|March 17, 2017
Weighted Ensemble Simulation: Review of Methodology, Applications, and SoftwareDaniel M Zuckerman, Lillian T ChongWiley Interdisciplinary Reviews. Computational Molecular Science|December 8, 2025
Weighted Ensemble Simulation: Advances in methods, software, and applicationsLillian T Chong, Daniel M ZuckermanCurrent Opinion in Structural Biology|December 17, 2016
Path-sampling strategies for simulating rare events in biomolecular systemsLillian T Chong, Ali S Saglam, Daniel M ZuckermanBiorxiv : the Preprint Server for Biology|April 10, 2026
Rectifying AI-generated protein structure ensembles for equilibrium using physics-based computationsLisa Otten, Jeremy M Leung, Lillian T Chong, et al.Protein Science : a Publication of the Protein Society|July 2, 2015
Estimating first-passage time distributions from weighted ensemble simulations and non-Markovian analysesErnesto Suárez, Adam J Pratt, Lillian T Chong, et al.The Journal of Physical Chemistry Letters|August 18, 2016
Efficient Atomistic Simulation of Pathways and Calculation of Rate Constants for a Protein-Peptide Binding Process: Application to the MDM2 Protein and an Intrinsically Disordered p53 PeptideMatthew C Zwier, Adam J Pratt, Joshua L Adelman, et al.Biophysical Journal|November 22, 2011
Simulations of the alternating access mechanism of the sodium symporter Mhp1Joshua L Adelman, Amy L Dale, Matthew C Zwier, et al.Journal of Chemical Theory and Computation|September 24, 2014
Simultaneous Computation of Dynamical and Equilibrium Information Using a Weighted Ensemble of TrajectoriesErnesto Suárez, Steven Lettieri, Matthew C Zwier, et al.The Journal of Physical Chemistry. B|February 4, 2012
Effects of high temperature on desolvation costs of salt bridges across protein binding interfaces: similarities and differences between implicit and explicit solvent modelsReza Salari, Lillian T ChongThe Journal of Physical Chemistry Letters|June 13, 2014
Desolvation Costs of Salt Bridges across Protein Binding Interfaces: Similarities and Differences between Implicit and Explicit Solvent ModelsReza Salari, Lillian T ChongPageof 15