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Bioinformatics (Oxford, England)|February 28, 2004
Second eigenvalue of the Laplacian matrix for predicting RNA conformational switch by mutationDanny BarashJournal of Computational Biology : a Journal of Computational Molecular Cell Biology|January 22, 2005
Spectral decomposition for the search and analysis of RNA secondary structureDanny BarashNucleic Acids Research|November 7, 2003
Deleterious mutation prediction in the secondary structure of RNAsDanny BarashBMC Genomics|April 3, 2016
A streamlined tethered chromosome conformation capture protocolIdan Gabdank, Sreejith Ramakrishnan, Anne M Villeneuve, et al.Wiley Interdisciplinary Reviews. RNA|February 7, 2013
RNA dot plots: an image representation for RNA secondary structure analysis and manipulationsAlexander Churkin, Danny BarashTrends in Biotechnology|December 1, 2023
Designing RNA switches for synthetic biology using inverse-RNA-foldingSumit Mukherjee, Danny BarashBMC Bioinformatics|April 28, 2006
RNAmute: RNA secondary structure mutation analysis toolAlexander Churkin, Danny BarashBMC Bioinformatics|May 1, 2008
An efficient method for the prediction of deleterious multiple-point mutations in the secondary structure of RNAs using suboptimal folding solutionsAlexander Churkin, Danny BarashBriefings in Bioinformatics|March 23, 2011
Mutational analysis in RNAs: comparing programs for RNA deleterious mutation predictionDanny Barash, Alexander ChurkinJournal of Biomolecular Structure & Dynamics|June 20, 2006
Shape similarity measures for the design of small RNA switchesAssaf Avihoo, Danny BarashPageof 9