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Proteins|April 4, 2008
Functional annotation by sequence-weighted structure alignments: statistical analysis and case studies from the Protein 3000 structural genomics project in JapanDaron M Standley, Hiroyuki Toh, Haruki NakamuraBMC Bioinformatics|April 5, 2007
ASH structure alignment package: sensitivity and selectivity in domain classificationDaron M Standley, Hiroyuki Toh, Haruki NakamuraProteins|September 2, 2004
Detecting local structural similarity in proteins by maximizing number of equivalent residuesDaron M Standley, Hiroyuki Toh, Haruki NakamuraBMC Bioinformatics|September 9, 2005
GASH: an improved algorithm for maximizing the number of equivalent residues between two protein structuresDaron M Standley, Hiroyuki Toh, Haruki NakamuraBioinformatics (Oxford, England)|March 20, 2010
SeSAW: balancing sequence and structural information in protein functional mappingDaron M Standley, Reiko Yamashita, Akira R Kinjo, et al.FEBS Letters|October 31, 2006
Flexible docking of an amyloid-forming peptide from beta(2)-microglobulinDaron M Standley, Yasushige Yonezawa, Yuji Goto, et al.Protein Science : a Publication of the Protein Society|November 18, 2010
Ab initio simulation of a 57-residue protein in explicit solvent reproduces the native conformation in the lowest free-energy clusterJinzen Ikebe, Daron M Standley, Haruki Nakamura, et al.Briefings in Bioinformatics|April 24, 2008
Protein structure databases with new web services for structural biology and biomedical researchDaron M Standley, Akira R Kinjo, Kengo Kinoshita, et al.Biochemistry|May 22, 2009
Membrane attachment facilitates ligand access to the active site in monoamine oxidase ARossen Apostolov, Yasushige Yonezawa, Daron M Standley, et al.Proteins|September 7, 2007
Docking of protein molecular surfaces with evolutionary trace analysisEiji Kanamori, Yoichi Murakami, Yuko Tsuchiya, et al.Pageof 44