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Genome Biology|January 10, 2015
Transposable elements modulate human RNA abundance and splicing via specific RNA-protein interactionsDavid R Kelley, David G Hendrickson, Danielle Tenen, et al.Genome Biology|February 18, 2016
Widespread RNA binding by chromatin-associated proteinsDavid G Hendrickson, David R Kelley, Danielle Tenen, et al.Genome Research|May 20, 2016
Basset: learning the regulatory code of the accessible genome with deep convolutional neural networksDavid R Kelley, Jasper Snoek, John L RinnNature Biotechnology|December 11, 2012
Differential analysis of gene regulation at transcript resolution with RNA-seqCole Trapnell, David G Hendrickson, Martin Sauvageau, et al.Cell Reports|April 28, 2021
Differentiation reveals latent features of aging and an energy barrier in murine myogenesisJacob C Kimmel, Nelda Yi, Margaret Roy, et al.Cell Stem Cell|September 1, 2015
Genome-wide RNA-Seq of Human Motor Neurons Implicates Selective ER Stress Activation in Spinal Muscular AtrophyShi-Yan Ng, Boon Seng Soh, Natalia Rodriguez-Muela, et al.Proceedings of the National Academy of Sciences of the United States of America|February 13, 2013
Long noncoding RNAs regulate adipogenesisLei Sun, Loyal A Goff, Cole Trapnell, et al.Cold Spring Harbor Perspectives in Biology|August 3, 2014
lncRNAs: linking RNA to chromatinJohn L RinnGenome Research|November 23, 2019
Murine single-cell RNA-seq reveals cell-identity- and tissue-specific trajectories of agingJacob C Kimmel, Lolita Penland, Nimrod D Rubinstein, et al.Cell Systems|June 28, 2020
Solo: Doublet Identification in Single-Cell RNA-Seq via Semi-Supervised Deep LearningNicholas J Bernstein, Nicole L Fong, Irene Lam, et al.Pageof 22