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Bioessays : News and Reviews in Molecular, Cellular and Developmental Biology|January 22, 2024
Design patterns of biological cellsSteven S Andrews, H Steven Wiley, Herbert M Sauro
F1000Research|March 19, 2019
Recent advances in biomedical simulations: a manifesto for model engineeringJoseph L Hellerstein, Stanley Gu, Kiri Choi, et al.
IEEE Transactions on Biomedical Circuits and Systems|September 16, 2015
Controlling E. coli Gene Expression NoiseKyung Hyuk Kim, Kiri Choi, Bryan Bartley, et al.
Biorxiv : the Preprint Server for Biology|July 14, 2025
SBMLNetwork: a framework for standards-based visualization of biochemical modelsAdel Heydarabadipour, Lucian Smith, Joseph L Hellerstein, et al.
Biorxiv : the Preprint Server for Biology|April 17, 2026
Antimony 3: Extending human-readable model definitions for SBML Level 3 Core and PackagesAdel Heydarabadipour, Lucian Smith, Joseph L Hellerstein, et al.
Plos Computational Biology|September 22, 2025
SBMLNetwork: A framework for standards-based visualization of biochemical modelsAdel Heydarabadipour, Lucian Smith, Joseph L Hellerstein, et al.
Bioinformatics (Oxford, England)|August 6, 2005
Bifurcation discovery toolVijay Chickarmane, Sri R Paladugu, Frank Bergmann, et al.
Biochemistry and Molecular Biology Education : a Bimonthly Publication of the International Union of Biochemistry and Molecular Biology|March 22, 2024
Use of interactive mathematical simulations in Fundamentals of Biochemistry, a LibreText online educational resource, to promote understanding of dynamic reactionsHenry V Jakubowski, Henry Agnew, Bartholomew Jardine, et al.
Bioinformatics (Oxford, England)|September 16, 2022
SBbadger: biochemical reaction networks with definable degree distributionsMichael A Kochen, H Steven Wiley, Song Feng, et al.
Biorxiv : the Preprint Server for Biology|July 28, 2023
An Automated Model Annotation System (AMAS) for SBML ModelsWoosub Shin, John H Gennari, Joseph L Hellerstein, et al.
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