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Biophysical Journal|March 30, 2017
Synthetic Biology: Engineering Living Systems from Biophysical PrinciplesBryan A Bartley, Kyung Kim, J Kyle Medley, et al.Arxiv|September 21, 2023
Use of Interactive Simulations in Fundamentals of Biochemistry, a LibreText Online Educational Resource, to Promote Understanding of Dynamic ReactionsHenry V Jakubowski, Henry Agnew, Bartholomew E Jardine, et al.Bioinformatics (Oxford, England)|November 12, 2013
SBML and CellML translation in antimony and JSimLucian P Smith, Erik Butterworth, James B Bassingthwaighte, et al.Bioinformatics (Oxford, England)|October 26, 2023
An automated model annotation system (AMAS) for SBML modelsWoosub Shin, John H Gennari, Joseph L Hellerstein, et al.Journal of Bioinformatics and Computational Biology|October 25, 2016
phraSED-ML: A paraphrased, human-readable adaptation of SED-MLKiri Choi, Lucian P Smith, J Kyle Medley, et al.Journal of Translational Medicine|July 26, 2023
Adapting modeling and simulation credibility standards to computational systems biologyLillian T Tatka, Lucian P Smith, Joseph L Hellerstein, et al.BMC Systems Biology|February 11, 2014
Network topology and parameter estimation: from experimental design methods to gene regulatory network kinetics using a community based approachPablo Meyer, Thomas Cokelaer, Deepak Chandran, et al.Nucleic Acids Research|April 14, 2010
In-Fusion BioBrick assembly and re-engineeringSean C Sleight, Bryan A Bartley, Jane A Lieviant, et al.Bio Systems|June 2, 2018
A portable structural analysis library for reaction networksYosef Bedaso, Frank T Bergmann, Kiri Choi, et al.Journal of Biological Engineering|November 3, 2010
Designing and engineering evolutionary robust genetic circuitsSean C Sleight, Bryan A Bartley, Jane A Lieviant, et al.Pageof 17