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Bio Systems|August 18, 2023
SBcoyote: An extensible Python-based reaction editor and viewerJin Xu, Gary Geng, Nhan D Nguyen, et al.Arxiv|August 30, 2023
SBcoyote: An Extensible Python-Based Reaction Editor and ViewerJin Xu, Gary Geng, Nhan D Nguyen, et al.Plos Computational Biology|September 23, 2020
A compiler for biological networks on silicon chipsJ Kyle Medley, Jonathan Teo, Sung Sik Woo, et al.ACS Synthetic Biology|February 9, 2017
A Visual Language for Protein DesignRobert Sidney Cox, James Alastair McLaughlin, Raik Grünberg, et al.Bio Systems|July 28, 2018
Tellurium: An extensible python-based modeling environment for systems and synthetic biologyKiri Choi, J Kyle Medley, Matthias König, et al.Bioinformatics (Oxford, England)|June 16, 2021
libOmexMeta: enabling semantic annotation of models to support FAIR principlesCiaran Welsh, David P Nickerson, Anand Rampadarath, et al.Methods in Molecular Biology (Clifton, N.J.)|December 10, 2014
The synthetic biology open languageChris Myers, Kevin Clancy, Goksel Misirli, et al.Plos Computational Biology|April 20, 2026
A standardized workflow for kinetic metabolic model curation and disseminationMargaret Cook, Stella Anastasakis, Adel Heydarabadipour, et al.ACS Synthetic Biology|November 15, 2018
pySBOL: A Python Package for Genetic Design Automation and StandardizationBryan A Bartley, Kiri Choi, Meher Samineni, et al.Bioinformatics (Oxford, England)|September 4, 2025
Discovering Subnetworks in SBML ModelsJoseph L Hellerstein, Lucian P Smith, Lillian T Tatka, et al.Pageof 17