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Plos Computational Biology|August 9, 2008
Efficient algorithms for probing the RNA mutation landscapeJérôme Waldispühl, Srinivas Devadas, Bonnie Berger, et al.
Journal of Bioinformatics and Computational Biology|September 29, 2009
Asymptotics of canonical and saturated RNA secondary structuresPeter Clote, Evangelos Kranakis, Danny Krizanc, et al.
RNA (New York, N.Y.)|April 21, 2005
Structural RNA has lower folding energy than random RNA of the same dinucleotide frequencyPeter Clote, Fabrizio Ferré, Evangelos Kranakis, et al.
Nucleic Acids Research|June 15, 2007
DIAL: a web server for the pairwise alignment of two RNA three-dimensional structures using nucleotide, dihedral angle and base-pairing similaritiesF Ferrè, Y Ponty, W A Lorenz, et al.
IEEE/ACM Transactions on Computational Biology and Bioinformatics|March 2, 2011
On lattice protein structure prediction revisitedIvan Dotu, Manuel Cebrián, Pascal Van Hentenryck, et al.
BMC Bioinformatics|December 15, 2016
New tools to analyze overlapping coding regionsAmir H Bayegan, Juan Antonio Garcia-Martin, Peter Clote
Nucleic Acids Research|July 18, 2006
transFold: a web server for predicting the structure and residue contacts of transmembrane beta-barrelsJ Waldispühl, Bonnie Berger, Peter Clote, et al.
RNA Biology|November 21, 2013
Using RNA inverse folding to identify IRES-like structural subdomainsIvan Dotu, Gloria Lozano, Peter Clote, et al.
BMC Cancer|April 13, 2021
Reference-free transcriptome signatures for prostate cancer prognosisHa T N Nguyen, Haoliang Xue, Virginie Firlej, et al.
Non-Coding RNA|November 29, 2021
Progress toward SHAPE Constrained Computational Prediction of Tertiary Interactions in RNA StructureGrégoire De Bisschop, Delphine Allouche, Elisa Frezza, et al.
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