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Biorxiv : the Preprint Server for Biology|June 4, 2025
Pseudoassembly of k-mersDelaney K Sullivan, Mayuko Boffelli, Lior PachterBioinformatics (Oxford, England)|June 14, 2024
Flexible parsing, interpretation, and editing of technical sequences with splitcodeDelaney K Sullivan, Lior PachterBiorxiv : the Preprint Server for Biology|March 30, 2023
Flexible parsing, interpretation, and editing of technical sequences with splitcodeDelaney K Sullivan, Lior PachterBiorxiv : the Preprint Server for Biology|September 25, 2023
Universal preprocessing of single-cell genomics dataA Sina Booeshaghi, Delaney K Sullivan, Lior PachterNucleic Acids Research|December 10, 2024
Accurate quantification of nascent and mature RNAs from single-cell and single-nucleus RNA-seqDelaney K Sullivan, Kristján Eldjárn Hjörleifsson, Nikhila P Swarna, et al.Biorxiv : the Preprint Server for Biology|January 3, 2024
Efficient and accurate detection of viral sequences at single-cell resolution reveals putative novel viruses perturbing host gene expressionLaura Luebbert, Delaney K Sullivan, Maria Carilli, et al.Nature Biotechnology|April 22, 2025
Detection of viral sequences at single-cell resolution identifies novel viruses associated with host gene expression changesLaura Luebbert, Delaney K Sullivan, Maria Carilli, et al.Journal of Comparative Physiology. A, Neuroethology, Sensory, Neural, and Behavioral Physiology|August 29, 2025
A plea for academic truthLior PachterNature Methods|November 20, 2012
Streaming fragment assignment for real-time analysis of sequencing experimentsAdam Roberts, Lior PachterBriefings in Bioinformatics|May 11, 2002
The computational challenges of applying comparative-based computational methods to whole genomesInna Dubchak, Lior PachterPageof 21