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Methods in Cell Biology|October 17, 2025
Analysis of single-cell TCR repertoires and gene expression from multi-modal scRNA-seq dataChristina Plattner, Gregor Sturm, Dietmar RiederMethods in Cell Biology|October 17, 2025
Analysis of the tumor microenvironment using imaging mass cytometry dataZuzana Loncova, Zlatko Trajanoski, Dietmar RiederBioinformatics (Oxford, England)|January 31, 2004
ClusterControl: a web interface for distributing and monitoring bioinformatics applications on a Linux clusterGernot Stocker, Dietmar Rieder, Zlatko TrajanoskiIscience|August 20, 2024
Multimodal analysis unveils tumor microenvironment heterogeneity linked to immune activity and evasionÓscar Lapuente-Santana, Gregor Sturm, Joan Kant, et al.BMC Genomics|June 6, 2015
FunPat: function-based pattern analysis on RNA-seq time series dataTiziana Sanavia, Francesca Finotello, Barbara Di CamilloBriefings in Bioinformatics|December 28, 2016
Measuring the diversity of the human microbiota with targeted next-generation sequencingFrancesca Finotello, Eleonora Mastrorilli, Barbara Di CamilloFrontiers in Genetics|October 31, 2012
Transcription factoriesDietmar Rieder, Zlatko Trajanoski, James G McNallyInternational Review of Cell and Molecular Biology|January 15, 2024
Next-generation deconvolution of transcriptomic data to investigate the tumor microenvironmentLorenzo Merotto, Maria Zopoglou, Constantin Zackl, et al.Nature Reviews. Genetics|July 5, 2016
Computational genomics tools for dissecting tumour-immune cell interactionsHubert Hackl, Pornpimol Charoentong, Francesca Finotello, et al.Methods in Cell Biology|July 19, 2025
Next-generation deconvolution of the tumor microenvironment with omnideconvLorenzo Merotto, Alexander Dietrich, Markus List, et al.Pageof 12