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Journal of Virology|August 30, 2013
Quantifying selection against synonymous mutations in HIV-1 env evolutionFabio Zanini, Richard A NeherBioinformatics (Oxford, England)|October 26, 2012
FFPopSim: an efficient forward simulation package for the evolution of large populationsFabio Zanini, Richard A NeherVirus Research|January 1, 2017
Error rates, PCR recombination, and sampling depth in HIV-1 whole genome deep sequencingFabio Zanini, Johanna Brodin, Jan Albert, et al.Virus Evolution|May 2, 2017
In vivo mutation rates and the landscape of fitness costs of HIV-1Fabio Zanini, Vadim Puller, Johanna Brodin, et al.Elife|November 18, 2016
Establishment and stability of the latent HIV-1 DNA reservoirJohanna Brodin, Fabio Zanini, Lina Thebo, et al.Elife|December 15, 2015
Population genomics of intrapatient HIV-1 evolutionFabio Zanini, Johanna Brodin, Lina Thebo, et al.F1000Research|March 2, 2026
A universal tool for visualisation of networks and trees in PythonFabio ZaniniVirus Evolution|August 18, 2023
Contributions of adaptation and purifying selection to SARS-CoV-2 evolutionRichard A NeherVirus Evolution|June 30, 2025
Lost in the woods: shifting habitats can lead phylogeography astrayRichard A NeherBioinformatics (Oxford, England)|June 28, 2015
nextflu: real-time tracking of seasonal influenza virus evolution in humansRichard A Neher, Trevor BedfordPageof 15