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Frontiers in Molecular Biosciences|March 29, 2021
CUTie2: The Attack of the Cyclic Nucleotide Sensor ClonesFlorencia Klein, Florencia Sardi, Matías R Machado, et al.Journal of Chemical Theory and Computation|February 28, 2019
The SIRAH 2.0 Force Field: Altius, Fortius, CitiusMatías R Machado, Exequiel E Barrera, Florencia Klein, et al.Current Opinion in Virology|May 11, 2021
Fighting viruses with computers, right nowMatías R Machado, Sergio PantanoBioinformatics (Oxford, England)|January 17, 2016
SIRAH tools: mapping, backmapping and visualization of coarse-grained modelsMatías R Machado, Sergio PantanoJournal of Chemical Theory and Computation|January 31, 2020
Split the Charge Difference in Two! A Rule of Thumb for Adding Proper Amounts of Ions in MD SimulationsMatías R Machado, Sergio PantanoJournal of Chemical Theory and Computation|August 22, 2019
Fat SIRAH: Coarse-Grained Phospholipids To Explore Membrane-Protein DynamicsExequiel E Barrera, Matías R Machado, Sergio PantanoMethods in Molecular Biology (Clifton, N.J.)|March 14, 2022
How to Make the CUTiest Sensor in Three Simple Steps for Computational PedestriansFlorencia Klein, Cecilia Abreu, Sergio PantanoJournal of Chemical Information and Modeling|January 8, 2021
Wrapping Up Viruses at Multiscale Resolution: Optimizing PACKMOL and SIRAH Execution for Simulating the Zika VirusMartín Soñora, Leandro Martínez, Sergio Pantano, et al.Interface Focus|May 9, 2019
From quantum to subcellular scales: multi-scale simulation approaches and the SIRAH force fieldMatías R Machado, Ari Zeida, Leonardo Darré, et al.Journal of Chemical Theory and Computation|January 7, 2021
Assessing SIRAH's Capability to Simulate Intrinsically Disordered Proteins and PeptidesFlorencia Klein, Exequiel E Barrera, Sergio PantanoPageof 11