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Plos One|April 28, 2010
A parallel implementation of the network identification by multiple regression (NIR) algorithm to reverse-engineer regulatory gene networksFrancesco Gregoretti, Vincenzo Belcastro, Diego di Bernardo, et al.
Methods in Molecular Biology (Clifton, N.J.)|August 22, 2020
An Algorithm for the Analysis of the 3D Spatial Organization of the GenomeFrancesco Gregoretti, Alice Cortesi, Gennaro Oliva, et al.
Methods in Molecular Biology (Clifton, N.J.)|September 24, 2016
An Automatic Segmentation Method Combining an Active Contour Model and a Classification Technique for Detecting Polycomb-group Proteinsin High-Throughput Microscopy ImagesFrancesco Gregoretti, Elisa Cesarini, Chiara Lanzuolo, et al.
Methods in Molecular Biology (Clifton, N.J.)|May 22, 2023
Segmentation, 3D Reconstruction, and Analysis of PcG Proteins in Fluorescence Microscopy Images in Different Cell Culture ConditionsFrancesco Gregoretti, Federica Lucini, Elisa Cesarini, et al.
IEEE/ACM Transactions on Computational Biology and Bioinformatics|April 6, 2011
Reverse engineering and analysis of genome-wide gene regulatory networks from gene expression profiles using high-performance computingVincenzo Belcastro, Francesco Gregoretti, Velia Siciliano, et al.
Bioinformatics (Oxford, England)|February 22, 2014
Mantra 2.0: an online collaborative resource for drug mode of action and repurposing by network analysisDiego Carrella, Francesco Napolitano, Rossella Rispoli, et al.
Genome Research|May 18, 2019
4q-D4Z4 chromatin architecture regulates the transcription of muscle atrophic genes in facioscapulohumeral muscular dystrophyAlice Cortesi, Matthieu Pesant, Shruti Sinha, et al.
Nucleic Acids Research|July 26, 2011
Transcriptional gene network inference from a massive dataset elucidates transcriptome organization and gene functionVincenzo Belcastro, Velia Siciliano, Francesco Gregoretti, et al.
Nature Communications|December 9, 2020
SAMMY-seq reveals early alteration of heterochromatin and deregulation of bivalent genes in Hutchinson-Gilford Progeria SyndromeEndre Sebestyén, Fabrizia Marullo, Federica Lucini, et al.
The Journal of Cell Biology|November 11, 2015
Lamin A/C sustains PcG protein architecture, maintaining transcriptional repression at target genesElisa Cesarini, Chiara Mozzetta, Fabrizia Marullo, et al.
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