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The FEBS Journal|September 25, 2020
Spage2vec: Unsupervised representation of localized spatial gene expression signaturesGabriele Partel, Carolina WählbyBioinformatics (Oxford, England)|May 26, 2020
TissUUmaps: interactive visualization of large-scale spatial gene expression and tissue morphology dataLeslie Solorzano, Gabriele Partel, Carolina WählbyPlos Computational Biology|August 12, 2022
De novo spatiotemporal modelling of cell-type signatures in the developmental human heart using graph convolutional neural networksSergio Marco Salas, Xiao Yuan, Christer Sylven, et al.BMC Biology|October 20, 2020
Automated identification of the mouse brain's spatial compartments from in situ sequencing dataGabriele Partel, Markus M Hilscher, Giorgia Milli, et al.Cytometry. Part a : the Journal of the International Society for Analytical Cytology|December 20, 2018
Deep Learning in Image Cytometry: A ReviewAnindya Gupta, Philip J Harrison, Håkan Wieslander, et al.Cytometry. Part a : the Journal of the International Society for Analytical Cytology|January 23, 2016
Global gray-level thresholding based on object sizePetter Ranefall, Carolina WählbyPlos One|March 13, 2020
Introducing Hann windows for reducing edge-effects in patch-based image segmentationNicolas Pielawski, Carolina WählbyCytometry. Part a : the Journal of the International Society for Analytical Cytology|September 18, 2009
Robust signal detection in 3D fluorescence microscopyAmin Allalou, Amalka Pinidiyaarachchi, Carolina WählbyFrontiers in Physiology|February 14, 2022
Spatial Statistics for Understanding Tissue OrganizationAndrea Behanova, Anna Klemm, Carolina WählbyNature Communications|May 13, 2025
Combining spatial transcriptomics with tissue morphologyEduard Chelebian, Christophe Avenel, Carolina WählbyPageof 9