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Nature Methods|October 13, 2020
Predicting 3D genome folding from DNA sequence with AkitaGeoff Fudenberg, David R Kelley, Katherine S PollardProceedings of the National Academy of Sciences of the United States of America|January 20, 2019
Chromatin features constrain structural variation across evolutionary timescalesGeoff Fudenberg, Katherine S PollardGenome Research|July 24, 2021
Genome-wide variability in recombination activity is associated with meiotic chromatin organizationXiaofan Jin, Geoff Fudenberg, Katherine S PollardBiorxiv : the Preprint Server for Biology|September 15, 2025
Reconstructing the 3D genome organization of Neanderthals reveals that chromatin folding shaped phenotypic and sequence divergenceEvonne McArthur, David C Rinker, Yang Cheng, et al.Nature Biotechnology|November 22, 2011
High order chromatin architecture shapes the landscape of chromosomal alterations in cancerGeoff Fudenberg, Gad Getz, Matthew Meyerson, et al.Biorxiv : the Preprint Server for Biology|March 23, 2026
Structural variants in human congenital heart disease disrupt distal genomic regulatory contacts of developmental genesJodi Lee, Jingshing Wu, Maureen Pittman, et al.Bioinformatics (Oxford, England)|May 25, 2024
SuPreMo: a computational tool for streamlining in silico perturbation using sequence-based predictive modelsKetrin Gjoni, Katherine S PollardNature Communications|July 29, 2024
Exploring the roles of RNAs in chromatin architecture using deep learningShuzhen Kuang, Katherine S PollardAnnual Review of Genetics|September 7, 2022
Enhancer Function and Evolutionary Roles of Human Accelerated RegionsSean Whalen, Katherine S PollardCell|August 28, 2016
Toward Accurate and Quantitative Comparative MetagenomicsStephen Nayfach, Katherine S PollardPageof 28