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Plos Computational Biology|September 13, 2008
Preferentially quantized linker DNA lengths in Saccharomyces cerevisiaeJi-Ping Wang, Yvonne Fondufe-Mittendorf, Liqun Xi, et al.Nucleic Acids Research|June 11, 2009
Using DNA mechanics to predict in vitro nucleosome positions and formation energiesAlexandre V Morozov, Karissa Fortney, Daria A Gaykalova, et al.The Journal of Experimental Medicine|April 22, 2009
The activation-induced cytidine deaminase (AID) efficiently targets DNA in nucleosomes but only during transcriptionHong Ming Shen, Michael G Poirier, Michael J Allen, et al.Journal of Interferon & Cytokine Research : the Official Journal of the International Society for Interferon and Cytokine Research|March 29, 2014
High-density nucleosome occupancy map of human chromosome 9p21-22 reveals chromatin organization of the type I interferon gene clusterJonathan E Freaney, Quanwei Zhang, Erbay Yigit, et al.Plos Biology|March 22, 2007
H2A.Z-mediated localization of genes at the nuclear periphery confers epigenetic memory of previous transcriptional stateDonna Garvey Brickner, Ivelisse Cajigas, Yvonne Fondufe-Mittendorf, et al.Plos Computational Biology|November 8, 2008
Distinct modes of regulation by chromatin encoded through nucleosome positioning signalsYair Field, Noam Kaplan, Yvonne Fondufe-Mittendorf, et al.Nucleic Acids Research|February 16, 2013
High-resolution nucleosome mapping of targeted regions using BAC-based enrichmentErbay Yigit, Quanwei Zhang, Liqun Xi, et al.Proceedings of the National Academy of Sciences of the United States of America|November 27, 2013
Chemical map of Schizosaccharomyces pombe reveals species-specific features in nucleosome positioningGeorgette Moyle-Heyrman, Tetiana Zaichuk, Liqun Xi, et al.Nature|July 25, 2006
A genomic code for nucleosome positioningEran Segal, Yvonne Fondufe-Mittendorf, Lingyi Chen, et al.Nature Genetics|March 3, 2009
Gene expression divergence in yeast is coupled to evolution of DNA-encoded nucleosome organizationYair Field, Yvonne Fondufe-Mittendorf, Irene K Moore, et al.Pageof 22