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BMC Genomics|July 15, 2010
Bcheck: a wrapper tool for detecting RNase P RNA genesDilmurat Yusuf, Manja Marz, Peter F Stadler, et al.
Bioinformatics (Oxford, England)|March 21, 2014
Basin Hopping Graph: a computational framework to characterize RNA folding landscapesMarcel Kucharík, Ivo L Hofacker, Peter F Stadler, et al.
Nucleic Acids Research|July 18, 2024
Sampling globally and locally correct RNA 3D structures using Ernwin, SPQR and experimental SAXS dataBernhard C Thiel, Giovanni Bussi, Simón Poblete, et al.
RNA Biology|September 30, 2011
Animal snoRNAs and scaRNAs with exceptional structuresManja Marz, Andreas R Gruber, Christian Höner Zu Siederdissen, et al.
Wiley Interdisciplinary Reviews. RNA|July 22, 2014
Functional repeat-derived RNAs often originate from retrotransposon-propagated ncRNAsKatarzyna Matylla-Kulinska, Hakim Tafer, Adam Weiss, et al.
Insect Biochemistry and Molecular Biology|February 3, 2015
Developmentally regulated expression and expression strategies of Drosophila snoRNAsAlberto Angrisani, Hakim Tafer, Peter F Stadler, et al.
Nucleic Acids Research|January 31, 2012
RNA folding with soft constraints: reconciliation of probing data and thermodynamic secondary structure predictionStefan Washietl, Ivo L Hofacker, Peter F Stadler, et al.
RNA (New York, N.Y.)|December 10, 2023
3D feasibility of 2D RNA-RNA interaction paths by stepwise folding simulationsIrene K Beckmann, Maria Waldl, Sebastian Will, et al.
Bioinformatics (Oxford, England)|November 16, 2010
PLEXY: efficient target prediction for box C/D snoRNAsStephanie Kehr, Sebastian Bartschat, Peter F Stadler, et al.
Bioinformatics (Oxford, England)|April 10, 2004
Alignment of RNA base pairing probability matricesIvo L Hofacker, Stephan H F Bernhart, Peter F Stadler
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