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Algorithms for Molecular Biology : AMB|November 5, 2013
Accelerating calculations of RNA secondary structure partition functions using GPUsHarry A Stern, David H MathewsJournal of Chemical Theory and Computation|January 4, 2017
Revised RNA Dihedral Parameters for the Amber Force Field Improve RNA Molecular DynamicsAsaminew H Aytenfisu, Aleksandar Spasic, Alan Grossfield, et al.The Journal of Physical Chemistry. B|November 19, 2024
Modeling and NMR Data Elucidate the Structure of a G-Quadruplex-Ligand Interaction for a Pu22T-Cyclometalated Iridium(III) SystemCarly R Reed, Scott D Kennedy, Rachel H Horowitz, et al.Journal of Computational Chemistry|February 24, 2004
Simple algorithm for isothermal-isobaric molecular dynamicsHarry A SternThe Journal of Chemical Physics|May 5, 2007
Molecular simulation with variable protonation states at constant pHHarry A SternProteins|April 5, 2007
Scoring function accuracy for membrane protein structure predictionCen Gao, Harry A SternBioinformatics (Oxford, England)|February 26, 2005
Predicting a set of minimal free energy RNA secondary structures common to two sequencesDavid H MathewsCurrent Protocols in Bioinformatics|April 23, 2008
RNA secondary structure analysis using RNAstructureDavid H MathewsJournal of Molecular Biology|February 28, 2006
Revolutions in RNA secondary structure predictionDavid H MathewsRNA (New York, N.Y.)|July 24, 2004
Using an RNA secondary structure partition function to determine confidence in base pairs predicted by free energy minimizationDavid H MathewsPageof 20